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CLC Main Workbench

CLC Main Workbench - 4.1.2

make a large number of advanced protein sequence analyses

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This Version: Not rated (0.0)
Current Version: 4.1.2
Release Date: 2008-11-23
License: Commercial
Downloads (this version): 167
Downloads (all versions): 3,827
Price: $2,250.00

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Product Description:

This 4-week fully functional demo of CLC Combined Workbench aggregates all DNA sequence analyses of CLC Gene Workbench and all protein sequence analyses of CLC Protein Workbench. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are - Assembly of DNA sequencing data - Advanced primer design - Molecular cloning - Fully integrated 1D DNA Gel Simulator - Automatic SNP annotation of sequences - Secondary protein structure prediction - Integrated 3D molecular view - Signal Peptide Prediction (SignalP) - Transmembrane helix prediction (TMHMM) - Protein family analysis (PFAM) - 2 types of alignments - Phylogenetics - Motif search (known patterns) - Motif search using regular expressions - Motif search using ProSite patterns - Pattern discovery (unknown patterns) - Web based BLAST - BLAST on local databases - Batch processing of multiple analyses in one work-step - Dot plots - Hydrophobicity analyses - Antigenicity analyses - Searches on GenBank, SwissProt, TrEMBL, and PubMed - Detailed log of actions/analyses performed

What's new in this version:

  • The Side Panel's Find only high-lighted the first hit. This is now fixed.
  • Local BLAST: solved problem applying command-line parameters, now a checkbox determines whether command-line options should take effect
  • BLAST: it was possible to use a BLAST result as input and database
  • Trace data: fixed an error when deleting parts of an unsaved sequence with traces
  • Better performance when zooming a dot plot
  • Better performance when using the Side Panel's Find in large contigs and sequence lists
  • When right-clicking a CDS annotation and translating into protein, gaps were erroneously introduced into the protein sequence
  • There was an error related to selecting sequences in the Cloning editor
  • Multi-select (using Ctrl / Command key) did not work for sequence lists
  • Various bug fixes

Operating System Requirements:

This product is designed to run on the following operating systems:

  • Windows Vista
  • Windows XP
  • Windows 2003
  • Windows 2000

Additional Requirements:

  • 256MB RAM
  • 1024 x 768 resolution recommended
  • OpenGL graphics driver

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