Existing users, 
 Sequence Analysis - 1.5.9DNA & protein sequence analysis |
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Information Related to Version:
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Product Description:
Sequence editing, reverse complement, protein translation, ORF finding, secondary structure, regular expressions, composition, isoelectric point, primer design, pairwise comparison, publish layout, sequence reformatting. Fetches sequence entries directly from the NCBI via Accession number or GID. Reads most sequence formats.
This (Java) application is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware.
This (Java) application is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware.
What's new in this version:
- Pairwise: Added numbering to right side of each alignment line
- Digest: Using "REBase 504" enzyme list
- Digest: Layout enzymes in row order rather than column order
- Digest: To remove redundant or irrelevant enzymes; "Unselect" then "Forget"
You will want to trim the enzyme list to increase performance - Digest: To restore all forgotten enzymes; "Use REBASE..."
Working on a way to restore only desired enzymes - NCBI Fetch: Now requesting 'tinyseq' which only returns the basic sequence information
- NEW!: "Features" from NCBI fetched sequences -- display only
- Digest: Finished 'Fragments' panel to actually write out the fragment sizes
- ORF: Added Zoom In/Out, Fit to Width
- Pattern: Added Zoom In/Out, Fit to Width
- Digest/Graphic: Added Zoom In/Out, Fit to Width
- Features: Added Zoom In/Out, Fit to Width
Operating System Requirements:
This product is designed to run on the following operating systems:
- Mac OS X 10.4 PPC
- Mac OS X 10.3.9
- Mac OS X 10.3
Additional Requirements:
- Mac OS X 10.3.3 or higher
- Java 1.4.2 or higher
- OS X 10.4 "Tiger" compatible
Screenshots:
Download Links:
Download Sequence Analysis Version 1.5.9 (File Size: 2.1M)
Download Links:
Download Sequence Analysis Current Version (File Size: 2.2M)
Your Installed Versions:
Feedback Summary:
| Version 1.5.9: | |||||
| Overall Rating: |  (5.0) |
Features: |  (4.0) |
Support: | (4.0) |
| Ease of Use: | (5.0) |
Quality / Stability: | (5.0) |
Price: | (5.0) |
Key to Types of Feedback:
Reviews 
Troubleshooting 
Usage Tips 
Developer Notes 
Commentary 
Featured Reviews
how do u find sequence? - Version: 1.6.0, 4/12/2009 07:10PM PST
bang05
how do you find a sequence? the edit function does not work...
Excellent, but still work to do - Version: 1.6.0, 1/18/2006 02:53AM PST
boissel1
I plenty agree, it's an excellent piece of software. However, I will highly recommand the freeware7 donationware Ape (A plasmid editor, http://www.biology.utah.edu/jorgensen/wayned/ape/), which is not advertised in VT and does many more, even if its display looks a little too windowhish.
Wonderful for free. - Version: 1.5.9, 7/3/2005 11:53PM PST
gfb
Simple to use even though relatively comprehensive, and fast too. It would be nice if there was a way of saving sequences on quitting the app.
