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Mac OS X  |  Home / Education  |  Math / Science  |  WU BLAST 2.0

WU BLAST 2.0

WU BLAST 2.0 - 2006-01-01

biological sequence similarity search

All Time: (4.7)
This Version: Not rated (0.0)
Current Version: 2006-01-01
Release Date: 2006-01-15
License: Update
Downloads (this version): 2,120
Downloads (all versions): 7,032

Feedback Summary:

This Version:
Overall Rating: Not rated (0.0) Features: Not rated (0.0) Support: Not rated (0.0)
Ease of Use: Not rated (0.0) Quality / Stability: Not rated (0.0) Price: Not rated (0.0)
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All Feedback: 1 - 5 of 5



WU BLAST 2.0 ReviewRe-installed; works well - Version: 2006-01-01, 11/15/2006 05:18AM PST

iayork
In my previous comment I said I couldn't even get it to start. Please ignore that comment, because on a new machine with a fresh install I have no problems. Although I think I did everything the same, I suspect my previous machine had either permissions, or its PATH, screwed up.

WU-Blast works very well, is immensely configurable, and is fast and accurate. It's not aimed at beginners, either with computers or with genetics in general. Although it's MacOSX native it's a UNIX program, purely command-line. The documentation is extensive but technical -- you're expected to have a general grasp of the concepts before you start.

I'm giving it four stars overall, because five stars implies that it couldn't be improved. I think documentation could be made more accessible, and installation and running could in principle be simplified. However, for the audience this is aimed at these are not really flaws. Technically WU BLAST does exactly what it should do, and does so very well.
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WU BLAST 2.0 ReviewCan't even start it - Version: 2005-05-10c, 8/12/2005 07:10AM PST

iayork
The README file includes a lot of advanced help, but in my case I can't even get it running ... the cryptic instructions for using the command line simply don't work, even copying and pasting the 'examples'. Command line doesn't recognize that the program exists -- double-clicking on the executables yields only an error message ("FATAL: Invalid program name: ..."), because apparently they are supposed to be run from command line, which does nothing. Followed installation instructions carefully. I've been trying to use this software for a couple of years with no success. I've used NCBI blast for nearly 20 years, have a fair bit of experience with command line tools and scripts, but am completely baffled by this software. Very frustrating. I won't give rating to the functionality of the program, since I haven't been able to test it.
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WU BLAST 2.0 Reviewyep its the best by far - Version: 2.0, 1/15/2004 11:19PM PST

warbus
Always has been the fastest we have tested.. He optimizes it for every platform too. The guy rocks! Maps the human genome and does this too! Two of the best mac programers are in the same city working in St. Louis for free! Well he gets some money but Mike is all free at www.bombich.com lol Xserve ships with his products.
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WU BLAST 2.0 CommentaryExcept for an… - Version: 2.0, 2/9/2002 01:35PM PST

(1 of 1 users found this comment useful)

MasterBlaster
earlier 1998 version that I wouldn't recommend using (and consequently is not provided for MacOS X), the software is only made available to licensed users.
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WU BLAST 2.0 CommentaryI can't even… - Version: 2.0, 2/9/2002 10:10AM PST

(1 of 1 users found this comment useful)

BMerlin
*find* the Mac OS X version.
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